Models of predation and fishing mortality in aquatic ecosystems

The dynamics of fish stocks are greatly influenced by predatory and fishery removals. We describe the strengths and weaknesses of a suite of approaches that assess the scope and magnitude of fishery and predatory mortality in aquatic ecosystems. We examine: (i) empirical models for pattern detection, process exploration, and model parameterization (e.g. multispecies time series and multiple regression); (ii) qualitative process-based models of species interactions (e.g. food web analyses and loop analyses); and quantitative process-based multispecies models that include: (iii) static flow models (e.g. Ecopath ); (iv) dynamic models of either numerical abundance (e.g. Lotka–Volterra) or biomass (e.g. Ecosim and multispecies biomass dynamics); and (v) spatially explicit versions of the above. Decisions concerning a specific modelling approach should be evaluated in the context of the goals of the model and empirical database. Important considerations include model use, desired output, and management context. Four important factors to consider in model selection are the spatial and temporal extent and resolution, conservation of mass or numbers, mathematical representation of predator–prey interactions, and mathematical representation of technical interactions. We conclude that the most effective modelling exercise to achieve a given set of goals should incorporate the evaluation of multiple model configurations.     

Southern Hemisphere and deep-sea warming led deglacial atmospheric CO2 rise and tropical warming

Establishing what caused Earth's largest climatic changes in the past requires a precise knowledge of both the forcing and the regional responses. We determined the chronology of high- and low-latitude climate change at the last glacial termination by radiocarbon dating benthic and planktonic foraminiferal stable isotope and magnesium/calcium records from a marine core collected in the western tropical Pacific. Deep-sea temperatures warmed by approximately 2 degrees C between 19 and 17 thousand years before the present (ky B.P.), leading the rise in atmospheric CO2 and tropical-surface-ocean warming by approximately 1000 years. The cause of this deglacial deep-water warming does not lie within the tropics, nor can its early onset between 19 and 17 ky B.P. be attributed to CO2 forcing. Increasing austral-spring insolation combined with sea-ice albedo feedbacks appear to be the key factors responsible for this warming.     

Type C virus from cell cultures of chemically induced rat hepatomas

Type C RNA viruses are present in cell cultures from transplantable and primary hepatomas induced by aromatic amine carcinogens. Virus yield was markedly enhanced by treating the cells with bromodeoxyuridine. Preparations of rat hepatoma-associated virus obtained from cultures treated with this compound were deficient in DNA polymerase activity.     

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

The paucity of enzymes that efficiently deconstruct plant polysaccharides represents a major bottleneck for industrial-scale conversion of cellulosic biomass into biofuels. Cow rumen microbes specialize in degradation of cellulosic plant material, but most members of this complex community resist cultivation. To characterize biomass-degrading genes and genomes, we sequenced and analyzed 268 gigabases of metagenomic DNA from microbes adherent to plant fiber incubated in cow rumen. From these data, we identified 27,755 putative carbohydrate-active genes and expressed 90 candidate proteins, of which 57% were enzymatically active against cellulosic substrates. We also assembled 15 uncultured microbial genomes, which were validated by complementary methods including single-cell genome sequencing. These data sets provide a substantially expanded catalog of genes and genomes participating in the deconstruction of cellulosic biomass.     

Ex situ collections of cultivated flax (<Emphasis Type="Italic">Linum usitatissimum</Emphasis> L.) and other species of the genus <Emphasis Type="Italic">Linum</Emphasis> L.

An overview of ex situ collections of cultivated flax (Linum usitatissimum L.) and 53 other species of the genus Linum L. is presented. The names of 33 genebanks in 23 countries preserving Linum germplasm and the species preserved at these places are provided. World genebanks engage in ex situ preservation of about 48,000 accessions of cultivated flax (Linum usitatissimum). However, possibly only 10,000 accessions of these are unique. Of the ca. 200 species of the genus Linum, other than L. usitatissimum, 53 are reported to be represented in the world’s ex situ collections with a total of about 900 accessions. Of these, 279 accessions alone refer to the wild progenitor of cultivated flax, Linum bienne Mill. However, L. bienne from the region of origin of cultivated flax is rarely represented in genebank collections. References to publications describing the techniques for ex situ conservation and the infraspecific variation of cultivated flax are made. It is suggested that taxonomic species delimitation within the genus Linum is in need of clarification and that the variation in Linum species for ornamental use or use in breeding is investigated.     

Effect of adjacent agricultural habitat on the distribution of passerines in natural grasslands

Habitat heterogeneity has often been acknowledged as a key factor determining which species occur in a landscape, but we still know little on the nature and relative importance of the processes controlling species distribution and abundance within complex landscape mosaics. We used a framework defined by the compensation, supplementation and complementation models to study the distribution of four species of passerines typical of steppe habitats and identify the degree to which landscape context accounts for their distribution in the steppe-agriculture mosaic of the Crau, southern France. Steppe habitat was the best predictor of species distribution in all cases and that densities were highest in steppe. One of these species, the Calandra lark, is strictly tied to the natural steppe habitats independently of its context. For another species, the Tawny pipit, we document a significant positive effect of the presence, near steppe habitat, of extensive pastoral habitats, such as fallows and grazed crops. Finally, the abundance of the two remaining species, Skylark and Short-toed lark, was negatively affected by the presence of non-herbaceous habitats in the vicinity of steppe habitat. This suggests that the quality of the steppe habitat, as perceived by these species is conditional to the nature of adjacent habitats. Our results suggest that the management of the context in which steppe habitat is imbedded will significantly affect the distribution and abundance of this group of passerines and determine both habitat quality and conservation value at a landscape scale.     

The Concept of Varietal Ability for Partially Allogamous Crops

General (GVA) and specific (SVA) varietal ability quantify the value of genetic stocks as components for synthetic varieties. Additionally, these parameters can be used to predict the performance of the synthetics. The concept of varietal ability is known for completely allogamous crops. It has not yet been worked out for partial allogamy with a genotype-dependent degree of cross-fertilization. We have developed formulae to calculate GVA and SVA referring to generation Syn 1 in this general situation. The concept of varietal ability considers the influence of the components' per se performance on the resulting synthetic variety. This influence increases with decreasing degree of cross-fertilization. Thus, our formulae should be of special benefit to partially allogamous crops. The formulae are illustrated by a numerical example taken from our research on Vicia faba L. To estimate the relevant parameters for Vicia fabe L., we propose to use two morphological markers (flowers and seed colour) simultaneously.     

Weighing in on a method to discriminate maize haploid from hybrid seed

The doubled haploid breeding method can produce maize inbred lines faster than traditional methods, but there are challenges associated with it. Sorting haploid from hybrid seed based on visual colour markers is time consuming and can be difficult due to colour inhibitors that obscure pigmentation needed to distinguish between haploid, hybrid and outcrossed seed. In this study, weight was evaluated as a method to sort haploid from hybrid seed. A first experiment utilized two families for analysis in a preliminary study. Eleven haploid and hybrid kernels from both families were weighed for a total of 44 experimental units. A second experiment was carried out using six families, using the same format as the previous, for 132 experimental units. Hybrid seed weighed significantly more than haploid seed in both experiments. However, the interaction between line and kernel type was significant in the second experiment. In conclusion, efficacy of sorting haploid from hybrid kernels based on weight depends on the genotypes involved.     

The effect of GnRH on the pregnancy ratio in low-yielding local race cows: comparison of different injection times

Tropical Animal Health and Production - The objective of this article was to investigate the efficiency of GnRH administrations at different time points after induced luteolysis on pregnancy rates...